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... Sequences from the KEGG database of  protein 
KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome
KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome
Dunlap, Walter C; Starcevic, Antonio; Baranasic, Damir; Diminic, Janko; Zucko, Jurica; Gacesa, Ranko; H van Oppen, Madeleine J; Hranueli, Daslav; Cullum, John; Long, Paul F
function were used to construct hidden Markov ...
... transducing adapter molecule 1 ribosomal  protein 
Unscrambling butterfly oogenesis
Unscrambling butterfly oogenesis
Carter, Jean-Michel; Baker, Simon C; Pink, Ryan; Carter, David RF; Collins, Aiden; Tomlin, Jeremie; Gibbs, Melanie; Breuker, Casper J
LP2 PACG20471 nucleolar GTP-binding ...
... TNS order HNS order 1 JHP0952 hypothetical  protein 
Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori
Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori
Saunders, Nigel J; Boonmee, Prawit; Peden, John F; Jarvis, Stephen A
HP0427 14 3 1355 2 JHP0476 cag pathogenicity ...
... proteins containing sequence and/or  protein 
Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches
Genome-wide subcellular localization of putative outer membrane and extracellular proteins in Leptospira interrogans serovar Lai genome using bioinformatics approaches
Viratyosin, Wasna; Ingsriswang, Supawadee; Pacharawongsakda, Eakasit; Palittapongarnpim, Prasit
folding structures similar to those of known ...
... PCR targeting the 4b gene that encodes a core  protein 
Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.)
Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.)
Sarker, Subir; Das, Shubhagata; Lavers, Jennifer L.; Hutton, Ian; Helbig, Karla; Imbery, Jacob; Upton, Chris; Raidal, Shane R.
of ChPV, however, there were no evidence of ...
... resulting alternate transcripts often encode  protein 
Splice-mediated Variants of Proteins (SpliVaP) – data and characterization of changes in signatures among protein isoforms due to alternative splicing
Splice-mediated Variants of Proteins (SpliVaP) – data and characterization of changes in signatures among protein isoforms due to alternative splicing
Floris, Matteo; Orsini, Massimiliano; Thanaraj, Thangavel Alphonse
isoforms that differ in amino acid ...
... calreticulin, hemelipoprotein, IgG binding  protein 
A 24-48 h fed Amblyomma americanum tick saliva immuno-proteome
A 24-48 h fed Amblyomma americanum tick saliva immuno-proteome
Radulović, Željko M; Kim, Tae K; Porter, Lindsay M; Sze, Sing-Hoi; Lewis, Lauren; Mulenga, Albert
, ferritin, insulin-like growth factor ...
... pathways including heterotrimeric G-  protein 
The information highways of a biotechnological workhorse – signal transduction in Hypocrea jecorina
The information highways of a biotechnological workhorse – signal transduction in Hypocrea jecorina
Schmoll, Monika
cascades, cAMP signaling, mitogen activated ...
... internal tissues. Little is known about  protein 
Exploring the mialome of ticks: an annotated catalogue of midgut transcripts from the hard tick, Dermacentor variabilis (Acari: Ixodidae)
Exploring the mialome of ticks: an annotated catalogue of midgut transcripts from the hard tick, Dermacentor variabilis (Acari: Ixodidae)
Anderson, Jennifer M; Sonenshine, Daniel E; Valenzuela, Jesus G
expression in the digestive tract of ticks. ...
... Background Identification of  protein 
Identifying protein complexes from interaction networks based on clique percolation and distance restriction
Identifying protein complexes from interaction networks based on clique percolation and distance restriction
Wang, Jianxin; Liu, Binbin; Li, Min; Pan, Yi
complexes in large interaction networks is ...
... The increasing availability of large-scale  protein 
Recent advances in clustering methods for protein interaction networks
Recent advances in clustering methods for protein interaction networks
Wang, Jianxin; Li, Min; Deng, Youping; Pan, Yi
- ...
... functions. However, experimentally determined  protein 
Computational approaches for detecting protein complexes from protein interaction networks: a survey
Computational approaches for detecting protein complexes from protein interaction networks: a survey
Li, Xiaoli; Wu, Min; Kwoh, Chee-Keong; Ng, See-Kiong
complex data, especially of those involving ...
... to the length of the tail tape measure  protein 
Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex
Genomic analysis and relatedness of P2-like phages of the Burkholderia cepacia complex
Lynch, Karlene H; Stothard, Paul; Dennis, Jonathan J
for each of these three phages: KS14 gp12 is ...
... efficiently growing animals have increased  protein 
Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss)
Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss)
Salem, Mohamed; Silverstein, Jeff; Rexroad, Caird E, III; Yao, Jianbo
synthesis and/or reduced ...
... and kinase cascades such as mitogen-activated  protein 
Transcriptomic analysis of Sorghum bicolor responding to combined heat and drought stress
Transcriptomic analysis of Sorghum bicolor responding to combined heat and drought stress
Johnson, Stephanie M; Lim, Fei-Ling; Finkler, Aliza; Fromm, Hillel; Slabas, Antoni R; Knight, Marc R
(MAP) kinase cascades [8–11]. ...
... allowing for the identification of 183  protein 
The salivary gland transcriptome of the neotropical malaria vector Anopheles darlingi reveals accelerated evolution of genes relevant to hematophagy
The salivary gland transcriptome of the neotropical malaria vector Anopheles darlingi reveals accelerated evolution of genes relevant to hematophagy
Calvo, Eric; Pham, Van M; Marinotti, Osvaldo; Andersen, John F; Ribeiro, José MC
sequences, 114 of which code for putative ...
... (Hypocrea jecorina) that is an industrial  protein 
Correlation of gene expression and protein production rate - a system wide study
Correlation of gene expression and protein production rate - a system wide study
Arvas, Mikko; Pakula, Tiina; Smit, Bart; Rautio, Jari; Koivistoinen, Heini; Jouhten, Paula; Lindfors, Erno; Wiebe, Marilyn; Penttilä, Merja; Saloheimo, Markku
production host known for its exceptional ...
... Background Knowledge of  protein 
PDA: an automatic and comprehensive analysis program for protein-DNA complex structures
PDA: an automatic and comprehensive analysis program for protein-DNA complex structures
Kim, RyangGuk; Guo, Jun-tao
-DNA interactions at the structural-level can ...
... interest. However, unraveling large-scale  protein 
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
De Bodt, Stefanie; Proost, Sebastian; Vandepoele, Klaas; Rouzé, Pierre; Van de Peer, Yves
- ...
... building blocks of the proteome are  protein 
Protein domains and architectural innovation in plant-associated Proteobacteria
Protein domains and architectural innovation in plant-associated Proteobacteria
Studholme, David J; Downie, J Allan; Preston, Gail M
domains, the function of a ...
... fish oil. Plant proteins represent a suitable  protein 
Transcriptomic and physiological responses to fishmeal substitution with plant proteins in formulated feed in farmed Atlantic salmon (Salmo salar)
Transcriptomic and physiological responses to fishmeal substitution with plant proteins in formulated feed in farmed Atlantic salmon (Salmo salar)
Tacchi, Luca; Secombes, Christopher J; Bickerdike, Ralph; Adler, Michael A; Venegas, Claudia; Takle, Harald; Martin, Samuel AM
alternative to fish meal and are increasingly ...
... Ferritin heavy polypeptide 1, heat shock  protein 
Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals
Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals
Knoll-Gellida, Anja; André, Michèle; Gattegno, Tamar; Forgue, Jean; Admon, Arie; Babin, Patrick J
90-beta, lactate dehydrogenase B4, beta-actin ...
... of a large number of grape ripening-induced  protein 
Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development
Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development
Deluc, Laurent G; Grimplet, Jérôme; Wheatley, Matthew D; Tillett, Richard L; Quilici, David R; Osborne, Craig; Schooley, David A; Schlauch, Karen A; Cushman, John C; Cramer, Grant R
(GRIP) genes [16]. ...
... between transcript and corresponding  protein 
New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor, revealed by combined proteomic and transcriptomic analysis of liquid cultures
New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor, revealed by combined proteomic and transcriptomic analysis of liquid cultures
Hesketh, Andy; Bucca, Giselda; Laing, Emma; Flett, Fiona; Hotchkiss, Graham; Smith, Colin P; Chater, Keith F
levels. ...
... The quantitative relations between RNA and  protein 
Reduced changes in protein compared to mRNA levels across non-proliferating tissues
Reduced changes in protein compared to mRNA levels across non-proliferating tissues
Perl, Kobi; Ushakov, Kathy; Pozniak, Yair; Yizhar-Barnea, Ofer; Bhonker, Yoni; Shivatzki, Shaked; Geiger, Tamar; Avraham, Karen B.; Shamir, Ron
are fundamental to biology and are still not ...

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