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... Background Gene body  methylation 
Proximal methylation features associated with nonrandom changes in gene body methylation
Proximal methylation features associated with nonrandom changes in gene body methylation
Picard, Colette L.; Gehring, Mary
at CG dinucleotides is a widely conserved ...
... In the mouse, the patterns of DNA  methylation 
Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse
Ontogeny of CpG island methylation and specificity of DNMT3 methyltransferases during embryonic development in the mouse
Auclair, Ghislain; Guibert, Sylvain; Bender, Ambre; Weber, Michael
are established during early embryonic ...
... the impact of sex on the genome-wide DNA  methylation 
Sex differences in the genome-wide DNA methylation pattern and impact on gene expression, microRNA levels and insulin secretion in human pancreatic islets
Sex differences in the genome-wide DNA methylation pattern and impact on gene expression, microRNA levels and insulin secretion in human pancreatic islets
Hall, Elin; Volkov, Petr; Dayeh, Tasnim; Esguerra, Jonathan Lou S; Salö, Sofia; Eliasson, Lena; Rönn, Tina; Bacos, Karl; Ling, Charlotte
pattern in human pancreatic islets from ...
... Background DNA  methylation 
Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation
Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation
Lou, Shaoke; Lee, Heung-Man; Qin, Hao; Li, Jing-Woei; Gao, Zhibo; Liu, Xin; Chan, Landon L; KL Lam, Vincent; So, Wing-Yee; Wang, Ying; Lok, Si; Wang, Jun; Ma, Ronald CW; Tsui, Stephen Kwok-Wing; Chan, Juliana CN; Chan, Ting-Fung; Yip, Kevin Y
is an important type of epigenetic ...
... the effects of 5-azacytidine on DNA  methylation 
DNMT inhibitors reverse a specific signature of aberrant promoter DNA methylation and associated gene silencing in AML
DNMT inhibitors reverse a specific signature of aberrant promoter DNA methylation and associated gene silencing in AML
Lund, Kirstin; Cole, John J; VanderKraats, Nathan D; McBryan, Tony; Pchelintsev, Nikolay A; Clark, William; Copland, Mhairi; Edwards, John R; Adams, Peter D
and gene expression using whole-genome ...
... Background DNA  methylation 
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines
Bell, Jordana T; Pai, Athma A; Pickrell, Joseph K; Gaffney, Daniel J; Pique-Regi, Roger; Degner, Jacob F; Gilad, Yoav; Pritchard, Jonathan K
is an essential epigenetic mechanism ...
... Background DNA  methylation 
Distinct roles of DNMT1-dependent and DNMT1-independent methylation patterns in the genome of mouse embryonic stem cells
Distinct roles of DNMT1-dependent and DNMT1-independent methylation patterns in the genome of mouse embryonic stem cells
Li, Zhiguang; Dai, Hongzheng; Martos, Suzanne N.; Xu, Beisi; Gao, Yang; Li, Teng; Zhu, Guangjing; Schones, Dustin E.; Wang, Zhibin
patterns are initiated by de novo DNA ...
... for individual-specific genome-wide DNA  methylation 
Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
Zhang, Weiwei; Spector, Tim D; Deloukas, Panos; Bell, Jordana T; Engelhardt, Barbara E
profiles have enabled epigenome-wide ...
... Background DNA  methylation 
A genome-wide survey of DNA methylation in hexaploid wheat
A genome-wide survey of DNA methylation in hexaploid wheat
Gardiner, Laura-Jayne; Quinton-Tulloch, Mark; Olohan, Lisa; Price, Jonathan; Hall, Neil; Hall, Anthony
is an important mechanism of epigenetic ...
... genetic changes to gene expression, DNA  methylation 
Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome
Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome
Cheung, Warren A.; Shao, Xiaojian; Morin, Andréanne; Siroux, Valérie; Kwan, Tony; Ge, Bing; Aïssi, Dylan; Chen, Lu; Vasquez, Louella; Allum, Fiona; Guénard, Frédéric; Bouzigon, Emmanuelle; Simon, Marie-Michelle; Boulier, Elodie; Redensek, Adriana; Watt, Stephen; Datta, Avik; Clarke, Laura; Flicek, Paul; Mead, Daniel; Paul, Dirk S.; Beck, Stephan; Bourque, Guillaume; Lathrop, Mark; Tchernof, André; Vohl, Marie-Claude; Demenais, Florence; Pin, Isabelle; Downes, Kate; Stunnenberg, Hendrick G.; Soranzo, Nicole; Pastinen, Tomi; Grundberg, Elin
, and histone marks but these ...
... truffle Tuber melanosporum exploits DNA  methylation 
Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content
Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content
Montanini, Barbara; Chen, Pao-Yang; Morselli, Marco; Jaroszewicz, Artur; Lopez, David; Martin, Francis; Ottonello, Simone; Pellegrini, Matteo
to cope with the more than 45,000 ...
... and the importance of aberrant DNA  methylation 
Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer
Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer
Heyn, Holger; Vidal, Enrique; Ferreira, Humberto J.; Vizoso, Miguel; Sayols, Sergi; Gomez, Antonio; Moran, Sebastian; Boque-Sastre, Raquel; Guil, Sonia; Martinez-Cardus, Anna; Lin, Charles Y.; Royo, Romina; Sanchez-Mut, Jose V.; Martinez, Ramon; Gut, Marta; Torrents, David; Orozco, Modesto; Gut, Ivo; Young, Richard A.; Esteller, Manel
profiles is increasingly recognized. ...
... Background Differential DNA  methylation 
Non-imprinted allele-specific DNA methylation on human autosomes
Non-imprinted allele-specific DNA methylation on human autosomes
Zhang, Yingying; Rohde, Christian; Reinhardt, Richard; Voelcker-Rehage, Claudia; Jeltsch, Albert
between alleles is well established in ...
... Background DNA  methylation 
Widespread natural variation of DNA methylation within angiosperms
Widespread natural variation of DNA methylation within angiosperms
Niederhuth, Chad E.; Bewick, Adam J.; Ji, Lexiang; Alabady, Magdy S.; Kim, Kyung Do; Li, Qing; Rohr, Nicholas A.; Rambani, Aditi; Burke, John M.; Udall, Joshua A.; Egesi, Chiedozie; Schmutz, Jeremy; Grimwood, Jane; Jackson, Scott A.; Springer, Nathan M.; Schmitz, Robert J.
is an important feature of plant ...
... humans. Results Here, we investigate DNA  methylation 
An analysis of DNA methylation in human adipose tissue reveals differential modification of obesity genes before and after gastric bypass and weight loss
An analysis of DNA methylation in human adipose tissue reveals differential modification of obesity genes before and after gastric bypass and weight loss
Benton, Miles C; Johnstone, Alice; Eccles, David; Harmon, Brennan; Hayes, Mark T; Lea, Rod A; Griffiths, Lyn; Hoffman, Eric P; Stubbs, Richard S; Macartney-Coxson, Donia
in adipose tissue from obese women before ...
... Background CpG  methylation 
Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation
Population whole-genome bisulfite sequencing across two tissues highlights the environment as the principal source of human methylome variation
Busche, Stephan; Shao, Xiaojian; Caron, Maxime; Kwan, Tony; Allum, Fiona; Cheung, Warren A.; Ge, Bing; Westfall, Susan; Simon, Marie-Michelle; Barrett, Amy; Bell, Jordana T.; McCarthy, Mark I.; Deloukas, Panos; Blanchette, Mathieu; Bourque, Guillaume; Spector, Timothy D.; Lathrop, Mark; Pastinen, Tomi; Grundberg, Elin; The Multiple Tissue Human Expression Resource
variation is involved in human trait ...
... analysis of the genome-wide DNA  methylation 
A comparative analysis of DNA methylation across human embryonic stem cell lines
A comparative analysis of DNA methylation across human embryonic stem cell lines
Chen, Pao-Yang; Feng, Suhua; Joo, Jong Wha Joanne; Jacobsen, Steve E; Pellegrini, Matteo
profiles from three human embryonic stem ...
... performed a systematic analysis of DNA  methylation 
DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes
DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes
Aran, Dvir; Sabato, Sivan; Hellman, Asaf
sites connected with gene expression ...
... Background DNA  methylation 
The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts
Wagner, James R; Busche, Stephan; Ge, Bing; Kwan, Tony; Pastinen, Tomi; Blanchette, Mathieu
plays an essential role in the regulation ...
... understood. Results Here, we profile CpG  methylation 
Trans effects of chromosome aneuploidies on DNA methylation patterns in human Down syndrome and mouse models
Trans effects of chromosome aneuploidies on DNA methylation patterns in human Down syndrome and mouse models
Mendioroz, Maite; Do, Catherine; Jiang, Xiaoling; Liu, Chunhong; Darbary, Huferesh K.; Lang, Charles F.; Lin, John; Thomas, Anna; Abu-Amero, Sayeda; Stanier, Philip; Temkin, Alexis; Yale, Alexander; Liu, Meng-Min; Li, Yang; Salas, Martha; Kerkel, Kristi; Capone, George; Silverman, Wayne; Yu, Y. Eugene; Moore, Gudrun; Wegiel, Jerzy; Tycko, Benjamin
in DS and control cerebral and cerebellar ...
... role in non-coding RNA-directed DNA  methylation 
The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci
The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci
Yang, Rong; Zheng, Zhimin; Chen, Qing; Yang, Lan; Huang, Huan; Miki, Daisuke; Wu, Wenwu; Zeng, Liang; Liu, Jun; Zhou, Jin-Xing; Ogas, Joe; Zhu, Jian-Kang; He, Xin-Jian; Zhang, Heng
in Arabidopsis thaliana. ...
... Aberrant DNA  methylation 
Pancancer analysis of DNA methylation-driven genes using MethylMix
Pancancer analysis of DNA methylation-driven genes using MethylMix
Gevaert, Olivier; Tibshirani, Robert; Plevritis, Sylvia K
is an important mechanism that ...
... has revealed an interplay between DNA  methylation 
Silencing of transposons in plant genomes: kick them when they're down
Silencing of transposons in plant genomes: kick them when they're down
Zilberman, Daniel; Henikoff, Steven
, histone ...
... Background DNA  methylation 
Lsh regulates LTR retrotransposon repression independently of Dnmt3b function
Lsh regulates LTR retrotransposon repression independently of Dnmt3b function
Dunican, Donncha S; Cruickshanks, Hazel A; Suzuki, Masako; Semple, Colin A; Davey, Tracey; Arceci, Robert J; Greally, John; Adams, Ian R; Meehan, Richard R
contributes to genomic integrity by ...
... but how ZGA relates to promoter DNA  methylation 
Developmental features of DNA methylation during activation of the embryonic zebrafish genome
Developmental features of DNA methylation during activation of the embryonic zebrafish genome
Andersen, Ingrid S; Reiner, Andrew H; Aanes, Håvard; Aleström, Peter; Collas, Philippe
states is unknown. ...

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