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... nucleotides across an organism’s genome (  methylation 
DNA methylation and gene expression in Mimulus guttatus
DNA methylation and gene expression in Mimulus guttatus
Colicchio, Jack M.; Miura, Fumihito; Kelly, John K.; Ito, Takashi; Hileman, Lena C.
) is a major regulator of genome ...
... Background DNA  methylation 
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
Li, Xin; Zhu, Jingde; Hu, Fengyi; Ge, Song; Ye, Mingzhi; Xiang, Hui; Zhang, Guojie; Zheng, Xiaoming; Zhang, Hongyu; Zhang, Shilai; Li, Qiong; Luo, Ruibang; Yu, Chang; Yu, Jian; Sun, Jingfeng; Zou, Xiaoyu; Cao, Xiaofeng; Xie, Xianfa; Wang, Jun; Wang, Wen
plays important biological roles in ...
... have been associated with changes in DNA  methylation 
A novel analysis strategy for integrating methylation and expression data reveals core pathways for thyroid cancer aetiology
A novel analysis strategy for integrating methylation and expression data reveals core pathways for thyroid cancer aetiology
Ozer, Bugra; Sezerman, Osman Uğur
levels, which play a vital role in gene ...
... regulation of gene expression through DNA  methylation 
Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects
Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects
van Eijk, Kristel R; de Jong, Simone; Boks, Marco PM; Langeveld, Terry; Colas, Fabrice; Veldink, Jan H; de Kovel, Carolien GF; Janson, Esther; Strengman, Eric; Langfelder, Peter; Kahn, René S; van den Berg, Leonard H; Horvath, Steve; Ophoff, Roel A
is an inverse association in which ...
... Background DNA  methylation 
MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data
MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data
Liao, Wen-Wei; Yen, Ming-Ren; Ju, Evaline; Hsu, Fei-Man; Lam, Larry; Chen, Pao-Yang
is a major epigenetic modification ...
... Background DNA  methylation 
Patterns of gene expression and DNA methylation in human fetal and adult liver
Patterns of gene expression and DNA methylation in human fetal and adult liver
Huse, Susan M.; Gruppuso, Philip A.; Boekelheide, Kim; Sanders, Jennifer A.
is an important epigenetic control ...
... Background DNA cytosine  methylation 
Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq
Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq
Li, Jinxiu; Li, Rujiao; Wang, Ying; Hu, Xiaoxiang; Zhao, Yiqiang; Li, Li; Feng, Chungang; Gu, Xiaorong; Liang, Fang; Lamont, Susan J.; Hu, Songnian; Zhou, Huaijun; Li, Ning
is an important epigenetic modification ...
... Background DNA cytosine  methylation 
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression
Vining, Kelly J; Pomraning, Kyle R; Wilhelm, Larry J; Priest, Henry D; Pellegrini, Matteo; Mockler, Todd C; Freitag, Michael; Strauss, Steven H
is an epigenetic modification that has ...
... Background DNA  methylation 
Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress
Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress
Lu, Xuke; Wang, Xiaoge; Chen, Xiugui; Shu, Na; Wang, Junjuan; Wang, Delong; Wang, Shuai; Fan, Weili; Guo, Lixue; Guo, Xiaoning; Ye, Wuwei
, with a cryptic role in genome ...
... Background Changes in DNA  methylation 
Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development
Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development
Liang, Ping; Song, Fei; Ghosh, Srimoyee; Morien, Evan; Qin, Maochun; Mahmood, Saleh; Fujiwara, Kyoko; Igarashi, Jun; Nagase, Hiroki; Held, William A
in the mammalian genome during ...
... a regulatory role of tissue specific DNA  methylation 
Gene and transposable element methylation in great tit (Parus major) brain and blood
Gene and transposable element methylation in great tit (Parus major) brain and blood
Derks, Martijn F. L.; Schachtschneider, Kyle M.; Madsen, Ole; Schijlen, Elio; Verhoeven, Koen J. F.; van Oers, Kees
in relation to gene expression. ...
... Background  Methylation 
Changes in correlation between promoter methylation and gene expression in cancer
Changes in correlation between promoter methylation and gene expression in cancer
Moarii, Matahi; Boeva, Valentina; Vert, Jean-Philippe; Reyal, Fabien
of high-density CpG regions known as CpG ...
... similarities with humans. Aberrant DNA  methylation 
Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model
Adult porcine genome-wide DNA methylation patterns support pigs as a biomedical model
Schachtschneider, Kyle M.; Madsen, Ole; Park, Chankyu; Rund, Laurie A.; Groenen, Martien A. M.; Schook, Lawrence B.
has been linked to many of these diseases ...
... As a major epigenetic component, DNA  methylation 
Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression
Reduced representation bisulphite sequencing of ten bovine somatic tissues reveals DNA methylation patterns and their impacts on gene expression
Zhou, Yang; Xu, Lingyang; Bickhart, Derek M.; abdel Hay, El Hamidi; Schroeder, Steven G.; Connor, Erin E.; Alexander, Leeson J.; Sonstegard, Tad S.; Van Tassell, Curtis P.; Chen, Hong; Liu, George E.
plays important functions in individual ...
... instable iPSCs with aberrant DNA  methylation 
Deciphering the heterogeneity in DNA methylation patterns during stem cell differentiation and reprogramming
Deciphering the heterogeneity in DNA methylation patterns during stem cell differentiation and reprogramming
Shao, Xiaojian; Zhang, Cuiyun; Sun, Ming-An; Lu, Xuemei; Xie, Hehuang
may divide and differentiate into cancer ...
... significantly impacts on the genome wide  methylation 
A targeted analysis reveals relevant shifts in the methylation and transcription of genes responsible for bile acid homeostasis and drug metabolism in non-alcoholic fatty liver disease
A targeted analysis reveals relevant shifts in the methylation and transcription of genes responsible for bile acid homeostasis and drug metabolism in non-alcoholic fatty liver disease
Schiöth, Helgi B.; Boström, Adrian; Murphy, Susan K.; Erhart, Wiebke; Hampe, Jochen; Moylan, Cynthia; Mwinyi, Jessica
and expression reporting top hit genes to ...
... Background DNA  methylation 
Widespread promoter methylation of synaptic plasticity genes in long-term potentiation in the adult brain in vivo
Widespread promoter methylation of synaptic plasticity genes in long-term potentiation in the adult brain in vivo
Maag, Jesper L. V.; Kaczorowski, Dominik C.; Panja, Debabrata; Peters, Timothy J.; Bramham, Clive R.; Wibrand, Karin; Dinger, Marcel E.
is a key modulator of gene expression in ...
... and divergent characteristics of DNA  methylation 
Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation
Genome-wide and single-base resolution DNA methylomes of the Pacific oyster Crassostrea gigas provide insight into the evolution of invertebrate CpG methylation
Wang, Xiaotong; Li, Qiye; Lian, Jinmin; Li, Li; Jin, Lijun; Cai, Huimin; Xu, Fei; Qi, Haigang; Zhang, Linlin; Wu, Fucun; Meng, Jie; Que, Huayong; Fang, Xiaodong; Guo, Ximing; Zhang, Guofan
among phylogenetic groups. ...
... Background DNA  methylation 
Functional complementation between transcriptional methylation regulation and post-transcriptional microRNA regulation in the human genome
Functional complementation between transcriptional methylation regulation and post-transcriptional microRNA regulation in the human genome
Su, Zhixi; Xia, Junfeng; Zhao, Zhongming
in the 5' promoter regions of genes and ...
... bees are unclear but differential DNA  methylation 
Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation
Parent-of-origin effects on genome-wide DNA methylation in the Cape honey bee (Apis mellifera capensis) may be confounded by allele-specific methylation
Remnant, Emily J.; Ashe, Alyson; Young, Paul E.; Buchmann, Gabriele; Beekman, Madeleine; Allsopp, Michael H.; Suter, Catherine M.; Drewell, Robert A.; Oldroyd, Benjamin P.
in eggs and sperm suggests that DNA ...
... Background The  methylation 
Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications
Identification of arginine- and lysine-methylation in the proteome of Saccharomyces cerevisiae and its functional implications
Pang, Chi Nam Ignatius; Gasteiger, Elisabeth; Wilkins, Marc R
of eukaryotic proteins has been proposed ...
... Background DNA  methylation 
Quantification of epigenetic biomarkers: an evaluation of established and emerging methods for DNA methylation analysis
Quantification of epigenetic biomarkers: an evaluation of established and emerging methods for DNA methylation analysis
Redshaw, Nicholas; Huggett, Jim F; Taylor, Martin S; Foy, Carole A; Devonshire, Alison S
is an important epigenetic mechanism in ...
... using multiple features derived from DNA  methylation 
Prediction of promoters and enhancers using multiple DNA methylation-associated features
Prediction of promoters and enhancers using multiple DNA methylation-associated features
Hwang, Woochang; Oliver, Verity F; Merbs, Shannath L; Zhu, Heng; Qian, Jiang
profile. ...
... of CGGBP1 as a possible mediator of CpG  methylation 
CGGBP1 mitigates cytosine methylation at repetitive DNA sequences
CGGBP1 mitigates cytosine methylation at repetitive DNA sequences
Agarwal, Prasoon; Collier, Paul; Fritz, Markus Hsi-Yang; Benes, Vladimir; Wiklund, Helena Jernberg; Westermark, Bengt; Singh, Umashankar
however remains unknown. ...
... study, we performed a genome-wide DNA  methylation 
Evidence for widespread changes in promoter methylation profile in human placenta in response to increasing gestational age and environmental/stochastic factors
Evidence for widespread changes in promoter methylation profile in human placenta in response to increasing gestational age and environmental/stochastic factors
Novakovic, Boris; Yuen, Ryan K; Gordon, Lavinia; Penaherrera, Maria S; Sharkey, Andrew; Moffett, Ashley; Craig, Jeffrey M; Robinson, Wendy P; Saffery, Richard
analysis of gene promoters in placenta ...

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