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... for individual-specific genome-wide DNA  methylation 
Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
Predicting genome-wide DNA methylation using methylation marks, genomic position, and DNA regulatory elements
Zhang, Weiwei; Spector, Tim D; Deloukas, Panos; Bell, Jordana T; Engelhardt, Barbara E
profiles have enabled epigenome-wide ...
... neck squamous cell carcinomas (HNSCC).  Methylation 
Quantitative methodology is critical for assessing DNA methylation and impacts on correlation with patient outcome
Quantitative methodology is critical for assessing DNA methylation and impacts on correlation with patient outcome
Lim, Annette M; Candiloro, Ida LM; Wong, Nicholas; Collins, Marnie; Do, Hongdo; Takano, Elena A; Angel, Christopher; Young, Richard J; Corry, June; Wiesenfeld, David; Kleid, Stephen; Sigston, Elizabeth; Lyons, Bernard; Rischin, Danny; Solomon, Benjamin; Dobrovic, Alexander
has been commonly assessed with ...
... subtypes of breast cancers. Because DNA  methylation 
DNA methylation signatures for breast cancer classification and prognosis
DNA methylation signatures for breast cancer classification and prognosis
Szyf, Moshe
is critical in programming gene ...
... We previously demonstrated that DNA  methylation 
Development of 5‘ LTR DNA methylation of latent HIV-1 provirus in cell line models and in long-term-infected individuals
Development of 5‘ LTR DNA methylation of latent HIV-1 provirus in cell line models and in long-term-infected individuals
Trejbalová, Kateřina; Kovářová, Denisa; Blažková, Jana; Machala, Ladislav; Jilich, David; Weber, Jan; Kučerová, Dana; Vencálek, Ondřej; Hirsch, Ivan; Hejnar, Jiří
of HIV-1 long terminal repeat (5’ LTR) ...
... modifications, particularly DNA  methylation 
DNA methylation markers in colorectal cancer
DNA methylation markers in colorectal cancer
Kim, Myoung Sook; Lee, Juna; Sidransky, David
in selected gene promoters, are ...
... Cytosine  methylation 
DNA Methylation: a Dynamic Regulator of Genome Organization and Gene Expression in Plants
DNA Methylation: a Dynamic Regulator of Genome Organization and Gene Expression in Plants
Finnegan, E. J.
plays many and varied roles in the ...
... Background DNA  methylation 
A genome-wide survey of DNA methylation in hexaploid wheat
A genome-wide survey of DNA methylation in hexaploid wheat
Gardiner, Laura-Jayne; Quinton-Tulloch, Mark; Olohan, Lisa; Price, Jonathan; Hall, Neil; Hall, Anthony
is an important mechanism of epigenetic ...
... regulation of gene expression through DNA  methylation 
Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects
Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects
van Eijk, Kristel R; de Jong, Simone; Boks, Marco PM; Langeveld, Terry; Colas, Fabrice; Veldink, Jan H; de Kovel, Carolien GF; Janson, Esther; Strengman, Eric; Langfelder, Peter; Kahn, René S; van den Berg, Leonard H; Horvath, Steve; Ophoff, Roel A
is an inverse association in which ...
... Background DNA  methylation 
Patterns of gene expression and DNA methylation in human fetal and adult liver
Patterns of gene expression and DNA methylation in human fetal and adult liver
Huse, Susan M.; Gruppuso, Philip A.; Boekelheide, Kim; Sanders, Jennifer A.
is an important epigenetic control ...
... namely histone modifications and DNA  methylation 
Epigenetic Regulation: Chromatin Modeling and Small RNAs
Epigenetic Regulation: Chromatin Modeling and Small RNAs
Chinnusamy, Viswanathan; Zhu, Jian-Kang
induced changes in the chromatin, give ...
... around CpG islands. It is unclear whether  methylation 
Characterization of human gastric carcinoma-related methylation of 9 miR CpG islands and repression of their expressions in vitro and in vivo
Characterization of human gastric carcinoma-related methylation of 9 miR CpG islands and repression of their expressions in vitro and in vivo
Du, Yantao; Liu, Zhaojun; Gu, Liankun; Zhou, Jing; Zhu, Bu-dong; Ji, Jiafu; Deng, Dajun
of these CpG islands represses miR ...
... genetic changes to gene expression, DNA  methylation 
Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome
Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome
Cheung, Warren A.; Shao, Xiaojian; Morin, Andréanne; Siroux, Valérie; Kwan, Tony; Ge, Bing; Aïssi, Dylan; Chen, Lu; Vasquez, Louella; Allum, Fiona; Guénard, Frédéric; Bouzigon, Emmanuelle; Simon, Marie-Michelle; Boulier, Elodie; Redensek, Adriana; Watt, Stephen; Datta, Avik; Clarke, Laura; Flicek, Paul; Mead, Daniel; Paul, Dirk S.; Beck, Stephan; Bourque, Guillaume; Lathrop, Mark; Tchernof, André; Vohl, Marie-Claude; Demenais, Florence; Pin, Isabelle; Downes, Kate; Stunnenberg, Hendrick G.; Soranzo, Nicole; Pastinen, Tomi; Grundberg, Elin
, and histone marks but these ...
... Background Aberrant DNA  methylation 
DNA methylation analysis reveals distinct methylation signatures in pediatric germ cell tumors
DNA methylation analysis reveals distinct methylation signatures in pediatric germ cell tumors
Amatruda, James F; Ross, Julie A; Christensen, Brock; Fustino, Nicholas J; Chen, Kenneth S; Hooten, Anthony J; Nelson, Heather; Kuriger, Jacquelyn K; Rakheja, Dinesh; Frazier, A Lindsay; Poynter, Jenny N
is a prominent feature of many cancers, ...
... Background DNA  methylation 
DNA methylation and transcriptional noise
DNA methylation and transcriptional noise
Huh, Iksoo; Zeng, Jia; Park, Taesung; Yi, Soojin V
is one of the most phylogenetically ...
... of multi-gene, locus-specific DNA  methylation 
Differential methylation relative to breast cancer subtype and matched normal tissue reveals distinct patterns
Differential methylation relative to breast cancer subtype and matched normal tissue reveals distinct patterns
Bardowell, Sabrina A.; Parker, Joel; Fan, Cheng; Crandell, Jamie; Perou, Charles M.; Swift-Scanlan, Theresa
patterns in relation to molecular subtype ...
... truffle Tuber melanosporum exploits DNA  methylation 
Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content
Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content
Montanini, Barbara; Chen, Pao-Yang; Morselli, Marco; Jaroszewicz, Artur; Lopez, David; Martin, Francis; Ottonello, Simone; Pellegrini, Matteo
to cope with the more than 45,000 ...
... driver of tumorigenesis, and DNA  methylation 
DNA methylation in ductal carcinoma in situof the breast
DNA methylation in ductal carcinoma in situof the breast
Pang, Jia-Min B; Dobrovic, Alexander; Fox, Stephen B
of specific gene promoters provides ...
... Background DNA cytosine  methylation 
Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq
Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq
Li, Jinxiu; Li, Rujiao; Wang, Ying; Hu, Xiaoxiang; Zhao, Yiqiang; Li, Li; Feng, Chungang; Gu, Xiaorong; Liang, Fang; Lamont, Susan J.; Hu, Songnian; Zhou, Huaijun; Li, Ning
is an important epigenetic modification ...
... Background DNA cytosine  methylation 
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression
Vining, Kelly J; Pomraning, Kyle R; Wilhelm, Larry J; Priest, Henry D; Pellegrini, Matteo; Mockler, Todd C; Freitag, Michael; Strauss, Steven H
is an epigenetic modification that has ...
... Background DNA  methylation 
Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress
Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress
Lu, Xuke; Wang, Xiaoge; Chen, Xiugui; Shu, Na; Wang, Junjuan; Wang, Delong; Wang, Shuai; Fan, Weili; Guo, Lixue; Guo, Xiaoning; Ye, Wuwei
, with a cryptic role in genome ...
... The comparison of DNA  methylation 
Pan-cancer patterns of DNA methylation
Pan-cancer patterns of DNA methylation
Witte, Tania; Plass, Christoph; Gerhauser, Clarissa
patterns across cancer types (pan-cancer ...
... present in the epigenome, in DNA  methylation 
Epigenetic Epidemiology for Cancer Risk: Harnessing Germline Epigenetic Variation
Epigenetic Epidemiology for Cancer Risk: Harnessing Germline Epigenetic Variation
Brennan, Kevin; Flanagan, James M.
as well as histone modifications, which ...
... (DMR) which has allele specific DNA  methylation 
Quantitative analysis of DNA methylation at all human imprinted regions reveals preservation of epigenetic stability in adult somatic tissue
Quantitative analysis of DNA methylation at all human imprinted regions reveals preservation of epigenetic stability in adult somatic tissue
Woodfine, Kathryn; Huddleston, Joanna E; Murrell, Adele
and contributes to imprinted gene ...
... disomy of chromosome 7. We measured DNA  methylation 
Genome-wide methylation analysis in Silver–Russell syndrome patients
Genome-wide methylation analysis in Silver–Russell syndrome patients
Prickett, A. R.; Ishida, M.; Böhm, S.; Frost, J. M.; Puszyk, W.; Abu-Amero, S.; Stanier, P.; Schulz, R.; Moore, G. E.; Oakey, R. J.
in 18 SRS patients at >485,000 CpG sites ...
... to genetic polymorphisms are unclear. DNA  methylation 
Extensive sequence-influenced DNA methylation polymorphism in the human genome
Extensive sequence-influenced DNA methylation polymorphism in the human genome
Hellman, Asaf; Chess, Andrew
, an epigenetic mark that is a covalent ...