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... a useful method for determining promoter  complexity 
Genomic analysis of gene regulation complexity
Genomic analysis of gene regulation complexity
Barker, Brandon; Lund, Jim
. ...
... Background High  complexity 
The complexity of gene expression dynamics revealed by permutation entropy
The complexity of gene expression dynamics revealed by permutation entropy
Sun, Xiaoliang; Zou, Yong; Nikiforova, Victoria; Kurths, Jürgen; Walther, Dirk
is considered a hallmark of living ...
... to quantify the relationship between  complexity 
How genome complexity can explain the difficulty of aligning reads to genomes
How genome complexity can explain the difficulty of aligning reads to genomes
Phan, Vinhthuy; Gao, Shanshan; Tran, Quang; Vo, Nam S
of genomes and difficulty of short-read ...
... a new measure, Ndim, estimating the  complexity 
A new method to measure complexity in binary or weighted networks and applications to functional connectivity in the human brain
A new method to measure complexity in binary or weighted networks and applications to functional connectivity in the human brain
Hahn, Klaus; Massopust, Peter R.; Prigarin, Sergei
of arbitrary networks. ...
... a new measure for quantifying the  complexity 
Quantitative measures for the management and comparison of annotated genomes
Quantitative measures for the management and comparison of annotated genomes
Eilbeck, Karen; Moore, Barry; Holt, Carson; Yandell, Mark
of alternative splicing, which we call ...
... resulting in a high computational  complexity 
ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database
ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database
Yu, Fengchao; Li, Ning; Yu, Weichuan
. ...
... the same analysis by identifying low-  complexity 
Identification of putative domain linkers by a neural network – application to a large sequence database
Identification of putative domain linkers by a neural network – application to a large sequence database
Miyazaki, Satoshi; Kuroda, Yutaka; Yokoyama, Shigeyuki
regions (LCR), which are known to encode ...
... algorithm that has an O(n3) expected time  complexity 
Efficient alignment of RNA secondary structures using sparse dynamic programming
Efficient alignment of RNA secondary structures using sparse dynamic programming
Zhong, Cuncong; Zhang, Shaojie
, where n is the average number of base ...
... ambiguously mapped to repetitive and low  complexity 
Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data
Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data
Dozmorov, Mikhail G; Adrianto, Indra; Giles, Cory B; Glass, Edmund; Glenn, Stuart B; Montgomery, Courtney; Sivils, Kathy L; Olson, Lorin E; Iwayama, Tomoaki; Freeman, Willard M; Lessard, Christopher J; Wren, Jonathan D
regions can also be problematic for ...
... a novel way to measure the informational  complexity 
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure
Liu, Qi; Yang, Yu; Chen, Chun; Bu, Jiajun; Zhang, Yin; Ye, Xiuzi
of RNA structural data, raising the ...
... for analyzing the impact of repeats on the  complexity 
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
Wetzel, Joshua; Kingsford, Carl; Pop, Mihai
of genome assembly [3]. ...
... on research focus. Results We define the  complexity 
Assessing the impact of human genome annotation choice on RNA-seq expression estimates
Assessing the impact of human genome annotation choice on RNA-seq expression estimates
Wu, Po-Yen; Phan, John H; Wang, May D
of human genome annotations in terms of ...
... cubic or similar) polynomial computational  complexity 
Algorithms for reconstruction of chromosomal structures
Algorithms for reconstruction of chromosomal structures
Lyubetsky, Vassily; Gershgorin, Roman; Seliverstov, Alexander; Gorbunov, Konstantin
among them to our knowledge. ...
... the most efficient among them, has space  complexity 
On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types
On finding bicliques in bipartite graphs: a novel algorithm and its application to the integration of diverse biological data types
Zhang, Yun; Phillips, Charles A; Rogers, Gary L; Baker, Erich J; Chesler, Elissa J; Langston, Michael A
O ( B ) and time ...
... decrease, depending on the similarity and  complexity 
Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation
Guided evolution of in silico microbial populations in complex environments accelerates evolutionary rates through a step-wise adaptation
Mozhayskiy, Vadim; Tagkopoulos, Ilias
of the intermediate and final ...
... the proposed algorithm has polynomial-time  complexity 
Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization
Identification of coherent patterns in gene expression data using an efficient biclustering algorithm and parallel coordinate visualization
Cheng, Kin-On; Law, Ngai-Fong; Siu, Wan-Chi; Liew, Alan Wee-Chung
in the worst case instead of ...
... considered in the past, the computational  complexity 
Metabolic network alignment in large scale by network compression
Metabolic network alignment in large scale by network compression
Ay, Ferhat; Dang, Michael; Kahveci, Tamer
of the existing solutions has so far ...
... classifier with an appropriate level of  complexity 
The identification of informative genes from multiple datasets with increasing complexity
The identification of informative genes from multiple datasets with increasing complexity
Anvar, S Yahya; 't Hoen, Peter AC; Tucker, Allan
by evaluation of predictive performance on ...
... biological accuracy and / or computational  complexity 
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Edgar, Robert C
. ...
... chance of finding a palindrome in low  complexity 
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins
Sheari, Armita; Kargar, Mehdi; Katanforoush, Ali; Arab, Shahriar; Sadeghi, Mehdi; Pezeshk, Hamid; Eslahchi, Changiz; Marashi, Sayed-Amir
sequences (i.e. sequences with extreme ...
... the different measures of genome  complexity 
A linear model for predicting performance of short-read aligners using genome complexity
A linear model for predicting performance of short-read aligners using genome complexity
Tran, Quang; Gao, Shanshan; Vo, Nam S; Phan, Vinhthuy
[1] that correlated best to the ...
... signal genomic regions of high structural  complexity 
Modelling and visualizing fine-scale linkage disequilibrium structure
Modelling and visualizing fine-scale linkage disequilibrium structure
Edwards, David
. ...
... is computationally expensive whose  complexity 
Efficient experimental design for uncertainty reduction in gene regulatory networks
Efficient experimental design for uncertainty reduction in gene regulatory networks
Dehghannasiri, Roozbeh; Yoon, Byung-Jun; Dougherty, Edward R
grows exponentially with the number of ...
... Our algorithm reduces computational  complexity 
Efficient motif finding algorithms for large-alphabet inputs
Efficient motif finding algorithms for large-alphabet inputs
Kuksa, Pavel P; Pavlovic, Vladimir
of the current motif finding algorithms ...
... own constraints (e.g., high time or space  complexity 
A fast weak motif-finding algorithm based on community detection in graphs
A fast weak motif-finding algorithm based on community detection in graphs
Jia, Caiyan; Carson, Matthew B; Yu, Jian
for finding long motifs, low precision in ...

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